Category: software

conda export environment and conda import environment

conda export and import feature is ideal functionality to build a predefined environment from a list in a text file.
Here are some caveats (or features), which may stumble the user to build a working conda environment list file:

  • There are packages, which are not available for all OS platforms. There are packages, which are only available in Linux platforms and other only under Windows platform!
  • There are package names, followed by version and build version. All three a valid entries in the list file – only the name of the package, the name of the package with version and the name of the package with version and build version. For example, 
      - setuptools=58.0.4=py38h06a4308_0
  - sqlite=3.37.0=hc218d9a_0
  - tk=8.6.11
  - wheel
  • Builds’ versions are specific for the OS and they are different for every Operating systems.
  • Packages’ versions do tend to deprecate, so the old environment may not be possible to replicate because of a missing package version. Exported list with version, which are unavailable any more and so it cannot be imported.
  • A good practice is to update the current working environment with the latest updates before exporting it.
  • Export environment list without build versions. Edit the exported environment list if some version is missing. The version of the packages could be removed, too.
  • The exported environment list uses yaml format.

1) Here is the command to export an environment list of a python environment with and without builds and versions of the packages:

  1. With builds versions 
    (base) myenv@srv ~ $ conda env export -n mypython37
name: mypython37
channels:
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=4.5=1_gnu
  - ca-certificates=2021.10.26=h06a4308_2
  - certifi=2021.10.8=py37h06a4308_2
  - ld_impl_linux-64=2.35.1=h7274673_9
  - libffi=3.3=he6710b0_2
  - libgcc-ng=9.3.0=h5101ec6_17
  - libgomp=9.3.0=h5101ec6_17
  - libstdcxx-ng=9.3.0=hd4cf53a_17
  - ncurses=6.3=h7f8727e_2
  - openssl=1.1.1m=h7f8727e_0
  - pip=21.2.2=py37h06a4308_0
  - python=3.7.11=h12debd9_0
  - readline=8.1.2=h7f8727e_1
  - setuptools=58.0.4=py37h06a4308_0
  - sqlite=3.37.0=hc218d9a_0
  - tk=8.6.11=h1ccaba5_0
  - wheel=0.37.1=pyhd3eb1b0_0
  - xz=5.2.5=h7b6447c_0
  - zlib=1.2.11=h7f8727e_4
prefix: /home/myenv/miniconda3/envs/mypython37

    By default, the output is in the console with YAML syntax. There is a JSON option and a file option to output it in a file:
    Keep on reading!

Installing conda command line in various systems with miniconda and create a simple python environment

Conda is yet another package, dependency and environment management for multiple languages like Python, C/C++, JavaScript, Java, Scala and many more
For example, with Conda the user could create python environment with the exact versions he needs! And it could be used under any Linux distribution or even Windows.

This article is to show how to install the command-line version of the Conda, which is part of the bigger platform Anaconda. The command-line version is distributed with the name Miniconda. In fact, Miniconda is a free installer for Conda, which includes only the basic set to run conda and conda install to install more than 8000 packages from the Anaconda repositories.

The Anaconda repositories could be found here: https://anaconda.org/anaconda/repo

Advantages of Miniconda:

  1. Minimal installation. 400 Mbytes, not 3G for the Anaconda platform.
  2. simple command-line interface. Couple of simple commands and their instructions are enough to bring up a complex environment for scientific or development purposes.
  3. The creating of a specific environment could be automated.
  4. No strange or not friendly GUI.
  5. Easy installation under most of the Linux distribution and Windows.
  6. The whole installation could occur only under a user’s home directory. No files require to be installed by the administrator or under global administrative path.

Keep on reading!

Debug options for LXC and lxc-start when lxc container could not start

Setup and running LXC container is really easy, but sometimes it is unclear why the LXC container could not start. Most of the time, there is a generic error, which says nothing for the real reason:

root@srv ~ # lxc-start -n test-lxc
lxc-start: test-lxc: lxccontainer.c: wait_on_daemonized_start: 867 Received container state "ABORTING" instead of "RUNNING"
lxc-start: test-lxc: tools/lxc_start.c: main: 306 The container failed to start
lxc-start: test-lxc: tools/lxc_start.c: main: 309 To get more details, run the container in foreground mode
lxc-start: test-lxc: tools/lxc_start.c: main: 311 Additional information can be obtained by setting the --logfile and --logpriority options

No specific reason why the LXC container test-lxc can not be started and the lxc-start command failed. There is just an offer to use the logging options and here is how the administrator of the box may do it by including the following lxc-start options:

-l DEBUG –logfile=test-lxc.log –logpriority=9

Here is a real-world example of an old kernel trying to run LXC 4.0
Keep on reading!

Installing single node Elasticsearch 7.16 and Kibana 7.16 behind nginx web server under CentOS 8

This article will show how to install two big software – Elasticsearch to store information and Kibana to visualize the information under CentOS 8. Elasticsearch is ideal to store big data such as logs from user activities or server logs – one central repository for data, which is structured properly and it could be easily accessed and manipulated with various software.
Kibana is used mainly for visualizing the data stored in the Elasticseach server and manage the Elasticsearch service by the web. ste

Here is a simple example: send the web servers logs in Elasticsearch and visual statistical data with Kibana.

Using the rpm repository for the two software is the best option for installation and in future upgrades.

STEP 1) Install the CentOS 8.

How to install CentOS 8 could be found here – How to do a network installation of CentOS 8 (8.0.1950) – minimal server installation.
Or if a container approach is needed, there is a how to with LXC container – Run LXC CentOS 8 container with bridged network under CentOS 8.

STEP 2) Install the Elasticsearch.

This installation and configuration is for single node server setup.
First, create a rpm repository file /etc/yum.repos.d/elasticsearch.repo and fill it with the Elasticsearch repository information:

[elasticsearch]
name=Elasticsearch repository for 7.x packages
baseurl=https://artifacts.elastic.co/packages/7.x/yum
gpgcheck=1
gpgkey=https://artifacts.elastic.co/GPG-KEY-elasticsearch
enabled=1
autorefresh=1
type=rpm-md

Then import the Elasticsearch GPG key and install the Elasticsearch software:

[root@loganalyzer ~]# rpm --import https://artifacts.elastic.co/GPG-KEY-elasticsearch
[root@loganalyzer ~]# dnf install elasticsearch
Last metadata expiration check: 0:00:19 ago on 11.12.2021 (Sat) 12:43:24 UTC.
Dependencies resolved.
==========================================================================================================================================
 Package            Architecture             Version                     Repository                                Size
==========================================================================================================================================
Installing:
 elasticsearch      x86_64                   7.16.0-1                    elasticsearch                             327 M

Transaction Summary
=========================================================================================================================================
Install  1 Package

Total download size: 327 M
Installed size: 526 M
Is this ok [y/N]: y
Downloading Packages:
elasticsearch-7.16.0-x86_64.rpm                                                                                 43 MB/s | 327 MB     00:07    
------------------------------------------------------------------------------------------------------------------------------------------
Total                                                                                                           43 MB/s | 327 MB     00:07     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                                                                                                                                     1/1 
  Running scriptlet: elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
Creating elasticsearch group... OK
Creating elasticsearch user... OK

  Installing       : elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
  Running scriptlet: elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
### NOT starting on installation, please execute the following statements to configure elasticsearch service to start automatically using systemd
 sudo systemctl daemon-reload
 sudo systemctl enable elasticsearch.service
### You can start elasticsearch service by executing
 sudo systemctl start elasticsearch.service

Created elasticsearch keystore in /etc/elasticsearch/elasticsearch.keystore

[/usr/lib/tmpfiles.d/elasticsearch.conf:1] Line references path below legacy directory /var/run/, updating /var/run/elasticsearch → /run/elasticsearch; please update the tmpfiles.d/ drop-in file accordingly.

  Verifying        : elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 

Installed:
  elasticsearch-7.16.0-1.x86_64                                                                                                                                                              

Complete!

The configuration files are placed in /etc/elasticsearch/:
Keep on reading!

Elasticsearch failed to set password apm_system error in initial setup

A relatively typical error when installing a single node Elastic Elasticsearch software is when the passwords are set:

[root@loganalyzer elasticsearch]# ./bin/elasticsearch-setup-passwords -v auto

Initiating the setup of passwords for reserved users elastic,apm_system,kibana,kibana_system,logstash_system,beats_system,remote_monitoring_user.
The passwords will be randomly generated and printed to the console.
Please confirm that you would like to continue [y/N]y



Connection failure to: http://192.168.0.4:9200/_security/user/apm_system/_password?pretty failed: Read timed out


ERROR: Failed to set password for user [apm_system].

Such error may prevent the initial password setting of several important passwords and compromise the Elasticsearch software security model. Even including the 

discovery.type: single-node

in the /etc/elasticsearch/elasticsearch.yml would lead to such error. The missing option in the configuration /etc/elasticsearch/elasticsearch.yml is:

discovery.seed_hosts: ["node-1"]

By default, this option is commented out and it should be set on initial installation, though it is not required when starting the elasticsearch node (with no security model enabled)!
This is an array with all the servers’ hostnames in the cluster setup. In single-node mode, this option (discovery.seed_hosts) should be set only to the hostname of the single node like in this case “node-1”. This is the hostname of the server. The user must include the user’s current server hostname, not this example name “node-1”!

Setting the right hostname for discovery.seed_hosts in /etc/elasticsearch/elasticsearch.yml would let the user to set all password with the Elasticsearch tool elasticsearch-setup-passwords

The error may occur in a cluster setup with multiple servers, too, if the hosts are not filled in this option – discovery.seed_hosts.
Here is what to expect when executing elasticsearch-setup-passwords (even with some RED indexes):

[root@loganalyzer ~]# cd /usr/share/elasticsearch/
[root@loganalyzer elasticsearch]# ./bin/elasticsearch-setup-passwords -v auto

Your cluster health is currently RED.
This means that some cluster data is unavailable and your cluster is not fully functional.

It is recommended that you resolve the issues with your cluster before running elasticsearch-setup-passwords.
It is very likely that the password changes will fail when run against an unhealthy cluster.

Do you want to continue with the password setup process [y/N]y

Initiating the setup of passwords for reserved users elastic,apm_system,kibana,kibana_system,logstash_system,beats_system,remote_monitoring_user.
The passwords will be randomly generated and printed to the console.
Please confirm that you would like to continue [y/N]y


Changed password for user apm_system
PASSWORD apm_system = judakai2Wai9Saiph8ah

Changed password for user kibana_system
PASSWORD kibana_system = eisiadit3CieG4Requie

Changed password for user kibana
PASSWORD kibana = bi3NohquohLoonaizei1

Changed password for user logstash_system
PASSWORD logstash_system = AhC2kue5eeR4eK1LeeZa

Changed password for user beats_system
PASSWORD beats_system = reeyu8ooj8Eebee5ni2c

Changed password for user remote_monitoring_user
PASSWORD remote_monitoring_user = aeshahx9Ohkoph3rai6a

Changed password for user elastic
PASSWORD elastic = beiPhei4xu5iXailocei

No errors and the password are set successfully.

OpenVPN stops working after network restart

Encountering the following problem – OpenVPN works perfectly when started or restarted, but when the network connection of the computer restarts or for example, the WIFI device resets (or loses the wifi network and connects again when it becomes available) the VPN never recovers. All networks routed via the VPN never seem to work again and they become dead ends to the computer despite the Internet connectivity is OK.
The logs show only attempts to connect again to the servers, but apparently with no success:

....
Oct 13 02:22:55 www openvpn[7744]: Attempting to establish TCP connection with [AF_INET]111.111.111.111:12345 [nonblock]
....
Oct 13 02:24:55 www openvpn[7744]: TCP: connect to [AF_INET]111.111.111.111:12345 failed: Connection timed out
....
Oct 13 02:22:55 www openvpn[7744]: Attempting to establish TCP connection with [AF_INET]111.111.111.111:12345 [nonblock]
....
Oct 13 02:24:55 www openvpn[7744]: TCP: connect to [AF_INET]111.111.111.111:12345 failed: Connection timed out

The server 111.111.111.111 is unreachable and it stays unreachable even the network connectivity recovered and the Internet of the computer is OK.
In this case, the OpenVPN server is part of a route network push to the client, and the OpenVPN IP is part of the pushed network to be routed via the VPN. And when the client’s network connection resets, the additional server’s IP route to the gateway disappears, but the pushed route does not, and now the OpenVPN server’s IP is part of a VPN route, which is dead because the VPN channel is dead. A restart of all OpenVPN routes is required (remove the special VPN device tun device with its routes and then add the device and routes again after successful reconnection to the OpenVPN server), but when an OpenVPN client option persist-tun is in the configuration, the restart won’t happen in the mentioned way. Only a restart of the service will remove the tun and its routes and then add them after a successful reconnection to the OpenVPN server.

Removing the persist-tun from the client’s configuration will trigger a full restart of the VPN channel – remove the special tun device and all OpenVPN routes and then reconnect and initialize the special tun device and then add the pushed routes.

Here is the example:

  • The OpenVPN server’s IP is 111.111.111.111.
  • The OpenVPN server pushes several networks to the client. Networks, which must be routed via the VPN. One of them happened to be 111.111.111.0/24, which includes the OpenVPN server’s IP.
  • The OpenVPN server adds a route for its IP to be routed via the default client’s gateway, which is 192.168.0.1. This is how the VPN channel works despite it pushed the whole network 111.111.111.0/24 via the VPN.

The problem appears when the network resets and the client’s OpenVPN process removes the route for the OpenVPN IP via the gateway because the gateway is not valid anymore! With persist-tun the pushed OpenVPN routes won’t be removed only reconnect attempts will be tried. But the OpenVPN IP now routes via the pushed server’s route via the dead VPN channel.
Keep on reading!

Zookeeper cluster delete all in a subtree – Failed to delete some node(s) in the subtree!

Deleting a node with a subtree in a Zookeeper is pretty easy and it could be done even with the Zookeeper cli from the command-line.

Deleting a node, which has a subtree could be done with the command “deleteall” but the command should be executing on the leader in the Zookeeper cluster!

If the user receives the following error:

root@zk01:/apache-zookeeper-3.7.0-bin# ./bin/zkCli.sh
[zk: localhost:2181(CONNECTED) 25] deleteall /clickhouse/statdata/collectd_metrics/replicas/replica_2
Failed to delete some node(s) in the subtree!

First, check if the Zookeeper node is the leader, and second, execute the deleteall command on the path, which should be deleted. Using the zkServer.sh in the Zookeeper bin directory to check whether the Zookeeper node is the leader one:

root@zk03:/apache-zookeeper-3.7.0-bin# ./bin/zkServer.sh status
ZooKeeper JMX enabled by default
Using config: /conf/zoo.cfg
Client port found: 2181. Client address: localhost. Client SSL: false.
Mode: leader
root@zk03:/apache-zookeeper-3.7.0-bin# ./bin/zkCli.sh
[zk: localhost:2181(CONNECTED) 0] deleteall /clickhouse/statdata/collectd_metrics/replicas/replica_2
[zk: localhost:2181(CONNECTED) 1]

No error, when the command deleteall is executed in the leader. No additional output either.

Deleting with the “delete” command will result in an error, too:

[zk: localhost:2181(CONNECTED) 0] delete /clickhouse/statdata/collectd_metrics/replicas/replica_2
Node not empty: /clickhouse/statdata/collectd_metrics/replicas/replica_2

Zookeeper cli output

The follower’s output with delete, deleteall and list command ls:

root@zk01:/apache-zookeeper-3.7.0-bin# ./bin/zkServer.sh status
ZooKeeper JMX enabled by default
Using config: /conf/zoo.cfg
Client port found: 2181. Client address: localhost. Client SSL: false.
Mode: follower
root@zk01:/apache-zookeeper-3.7.0-bin# ./bin/zkCli.sh
Connecting to localhost:2181
2021-09-21 04:24:34,369 [myid:] - INFO  [main:Environment@98] - Client environment:zookeeper.version=3.7.0-e3704b390a6697bfdf4b0bef79e3da7a4f6bac4b, built on 2021-03-17 09:46 UTC
2021-09-21 04:24:34,373 [myid:] - INFO  [main:Environment@98] - Client environment:host.name=zk01
2021-09-21 04:24:34,373 [myid:] - INFO  [main:Environment@98] - Client environment:java.version=11.0.12
2021-09-21 04:24:34,375 [myid:] - INFO  [main:Environment@98] - Client environment:java.vendor=Oracle Corporation
2021-09-21 04:24:34,376 [myid:] - INFO  [main:Environment@98] - Client environment:java.home=/usr/local/openjdk-11
2021-09-21 04:24:34,376 [myid:] - INFO  [main:Environment@98] - Client environment:java.class.path=/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/target/classes:/apache-zookeeper-3.7.0-bin/bin/../build/classes:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/target/lib/*.jar:/apache-zookeeper-3.7.0-bin/bin/../build/lib/*.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-prometheus-metrics-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-jute-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/snappy-java-1.1.7.7.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/slf4j-log4j12-1.7.30.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/slf4j-api-1.7.30.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_servlet-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_hotspot-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_common-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-native-unix-common-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-native-epoll-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-resolver-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-handler-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-common-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-codec-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-buffer-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/metrics-core-4.1.12.1.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/log4j-1.2.17.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jline-2.14.6.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-util-ajax-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-util-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-servlet-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-server-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-security-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-io-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-http-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/javax.servlet-api-3.1.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-databind-2.10.5.1.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-core-2.10.5.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-annotations-2.10.5.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/commons-cli-1.4.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/audience-annotations-0.12.0.jar:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-*.jar:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/src/main/resources/lib/*.jar:/conf:
2021-09-21 04:24:34,376 [myid:] - INFO  [main:Environment@98] - Client environment:java.library.path=/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib
2021-09-21 04:24:34,376 [myid:] - INFO  [main:Environment@98] - Client environment:java.io.tmpdir=/tmp
2021-09-21 04:24:34,376 [myid:] - INFO  [main:Environment@98] - Client environment:java.compiler=<NA>
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:os.name=Linux
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:os.arch=amd64
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:os.version=5.4.0-42-generic
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:user.name=root
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:user.home=/root
2021-09-21 04:24:34,377 [myid:] - INFO  [main:Environment@98] - Client environment:user.dir=/apache-zookeeper-3.7.0-bin
2021-09-21 04:24:34,378 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.free=55MB
2021-09-21 04:24:34,380 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.max=256MB
2021-09-21 04:24:34,380 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.total=64MB
2021-09-21 04:24:34,385 [myid:] - INFO  [main:ZooKeeper@637] - Initiating client connection, connectString=localhost:2181 sessionTimeout=30000 watcher=org.apache.zookeeper.ZooKeeperMain$MyWatcher@7946e1f4
2021-09-21 04:24:34,390 [myid:] - INFO  [main:X509Util@77] - Setting -D jdk.tls.rejectClientInitiatedRenegotiation=true to disable client-initiated TLS renegotiation
2021-09-21 04:24:34,397 [myid:] - INFO  [main:ClientCnxnSocket@239] - jute.maxbuffer value is 1048575 Bytes
2021-09-21 04:24:34,409 [myid:] - INFO  [main:ClientCnxn@1726] - zookeeper.request.timeout value is 0. feature enabled=false
Welcome to ZooKeeper!
2021-09-21 04:24:34,439 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1171] - Opening socket connection to server localhost/127.0.0.1:2181.
2021-09-21 04:24:34,441 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1173] - SASL config status: Will not attempt to authenticate using SASL (unknown error)
JLine support is enabled
2021-09-21 04:24:34,454 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1005] - Socket connection established, initiating session, client: /127.0.0.1:40846, server: localhost/127.0.0.1:2181
2021-09-21 04:24:34,467 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1438] - Session establishment complete on server localhost/127.0.0.1:2181, session id = 0x1006ad505c30007, negotiated timeout = 30000

WATCHER::

WatchedEvent state:SyncConnected type:None path:null
[zk: localhost:2181(CONNECTED) 0] delete /clickhouse/statdata/collectd_metrics/replicas/replica_2
Node not empty: /clickhouse/statdata/collectd_metrics/replicas/replica_2
[zk: localhost:2181(CONNECTED) 1] deleteall /clickhouse/statdata/collectd_metrics/replicas/replica_2
Failed to delete some node(s) in the subtree!
[zk: localhost:2181(CONNECTED) 2] ls /clickhouse/statdata/collectd_metrics/replicas/replica_2/parts
[2021_5155978_5164111_2367, 2021_5155978_5164112_2368, 2021_5155978_5164113_2369, 2021_5155978_5164114_2370, 2021_5155978_5164115_2371, 2021_5155978_5164116_2372, 2021_5155978_5164117_2373]

Deleting the node subtree in the Zookeeper leader:

root@zk03:/apache-zookeeper-3.7.0-bin# ./bin/zkServer.sh status
ZooKeeper JMX enabled by default
Using config: /conf/zoo.cfg
Client port found: 2181. Client address: localhost. Client SSL: false.
Mode: leader
root@zk03:/apache-zookeeper-3.7.0-bin# ./bin/zkCli.sh 
Connecting to localhost:2181
2021-09-21 04:41:55,397 [myid:] - INFO  [main:Environment@98] - Client environment:zookeeper.version=3.7.0-e3704b390a6697bfdf4b0bef79e3da7a4f6bac4b, built on 2021-03-17 09:46 UTC
2021-09-21 04:41:55,401 [myid:] - INFO  [main:Environment@98] - Client environment:host.name=zk03
2021-09-21 04:41:55,401 [myid:] - INFO  [main:Environment@98] - Client environment:java.version=11.0.12
2021-09-21 04:41:55,404 [myid:] - INFO  [main:Environment@98] - Client environment:java.vendor=Oracle Corporation
2021-09-21 04:41:55,404 [myid:] - INFO  [main:Environment@98] - Client environment:java.home=/usr/local/openjdk-11
2021-09-21 04:41:55,404 [myid:] - INFO  [main:Environment@98] - Client environment:java.class.path=/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/target/classes:/apache-zookeeper-3.7.0-bin/bin/../build/classes:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/target/lib/*.jar:/apache-zookeeper-3.7.0-bin/bin/../build/lib/*.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-prometheus-metrics-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-jute-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/zookeeper-3.7.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/snappy-java-1.1.7.7.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/slf4j-log4j12-1.7.30.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/slf4j-api-1.7.30.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_servlet-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_hotspot-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient_common-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/simpleclient-0.9.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-native-unix-common-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-native-epoll-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-transport-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-resolver-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-handler-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-common-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-codec-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/netty-buffer-4.1.59.Final.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/metrics-core-4.1.12.1.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/log4j-1.2.17.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jline-2.14.6.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-util-ajax-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-util-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-servlet-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-server-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-security-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-io-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jetty-http-9.4.38.v20210224.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/javax.servlet-api-3.1.0.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-databind-2.10.5.1.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-core-2.10.5.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/jackson-annotations-2.10.5.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/commons-cli-1.4.jar:/apache-zookeeper-3.7.0-bin/bin/../lib/audience-annotations-0.12.0.jar:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-*.jar:/apache-zookeeper-3.7.0-bin/bin/../zookeeper-server/src/main/resources/lib/*.jar:/conf:
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:java.library.path=/usr/java/packages/lib:/usr/lib64:/lib64:/lib:/usr/lib
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:java.io.tmpdir=/tmp
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:java.compiler=<NA>
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:os.name=Linux
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:os.arch=amd64
2021-09-21 04:41:55,405 [myid:] - INFO  [main:Environment@98] - Client environment:os.version=5.4.0-42-generic
2021-09-21 04:41:55,406 [myid:] - INFO  [main:Environment@98] - Client environment:user.name=root
2021-09-21 04:41:55,406 [myid:] - INFO  [main:Environment@98] - Client environment:user.home=/root
2021-09-21 04:41:55,406 [myid:] - INFO  [main:Environment@98] - Client environment:user.dir=/apache-zookeeper-3.7.0-bin
2021-09-21 04:41:55,406 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.free=56MB
2021-09-21 04:41:55,408 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.max=256MB
2021-09-21 04:41:55,408 [myid:] - INFO  [main:Environment@98] - Client environment:os.memory.total=64MB
2021-09-21 04:41:55,414 [myid:] - INFO  [main:ZooKeeper@637] - Initiating client connection, connectString=localhost:2181 sessionTimeout=30000 watcher=org.apache.zookeeper.ZooKeeperMain$MyWatcher@7946e1f4
2021-09-21 04:41:55,419 [myid:] - INFO  [main:X509Util@77] - Setting -D jdk.tls.rejectClientInitiatedRenegotiation=true to disable client-initiated TLS renegotiation
2021-09-21 04:41:55,427 [myid:] - INFO  [main:ClientCnxnSocket@239] - jute.maxbuffer value is 1048575 Bytes
2021-09-21 04:41:55,439 [myid:] - INFO  [main:ClientCnxn@1726] - zookeeper.request.timeout value is 0. feature enabled=false
Welcome to ZooKeeper!
2021-09-21 04:41:55,473 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1171] - Opening socket connection to server localhost/127.0.0.1:2181.
2021-09-21 04:41:55,477 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1173] - SASL config status: Will not attempt to authenticate using SASL (unknown error)
JLine support is enabled
2021-09-21 04:41:55,496 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1005] - Socket connection established, initiating session, client: /127.0.0.1:41234, server: localhost/127.0.0.1:2181
2021-09-21 04:41:55,513 [myid:localhost:2181] - INFO  [main-SendThread(localhost:2181):ClientCnxn$SendThread@1438] - Session establishment complete on server localhost/127.0.0.1:2181, session id = 0x3006ad4fdbc0002, negotiated timeout = 30000

WATCHER::

WatchedEvent state:SyncConnected type:None path:null
[zk: localhost:2181(CONNECTED) 0] deleteall /clickhouse/statdata/collectd_metrics/replicas/replica_2
[zk: localhost:2181(CONNECTED) 1] 2021-09-21 04:42:53,061 [myid:] - ERROR [main:ServiceUtils@42] - Exiting JVM with code 0
root@zk03:/apache-zookeeper-3.7.0-bin#

Delete the zookeeper logs and snapshot with FileTxnSnapLog from the command-line

The new version of zookeeper has the ability to auto-purge the logs and snapshots (if autopurge.snapRetainCount and autopurge.purgeInterval are enabled in the configuration), but if an older version is used or the administrator would like to force freeing space, there is a way using the command-line to remove the zookeepers logs and snapshots.
The manual shows how to do it (https://archive.cloudera.com/cdh4/cdh/4/zookeeper/zookeeperAdmin.html#sc_advancedConfiguration):

 java -cp zookeeper.jar:lib/slf4j-api-1.6.1.jar:lib/slf4j-log4j12-1.6.1.jar:lib/log4j-1.2.15.jar:conf \
     org.apache.zookeeper.server.PurgeTxnLog <dataDir> <snapDir> -n <count>
  • Load all needed jars with the current installed versions in zookeeper install directory appended with /lib
  • use the function org.apache.zookeeper.server.PurgeTxnLog
  • Append three parameters “[dataDir] [snapDir] -n [count]”. is in fact /datalog directory, is the directory where the snapshots are kept.

A more clear and detailed syntax:

java -cp [zookeeper & slf4j-api & slf4j-log4j12 & log4j & ... ].jar:conf org.apache.zookeeper.server.PurgeTxnLog \
     <base_datalog_dir> <base_snapshot_dir> <count>

Here is an example with zookeeper 3.7.0:

root@zoo1:~# cd /apache-zookeeper-3.7.0-bin/lib
root@zoo1:/apache-zookeeper-3.7.0-bin/lib# java -cp zookeeper-3.7.0.jar:slf4j-api-1.7.30.jar:slf4j-log4j12-1.7.30.jar:log4j-1.2.17.jar:zookeeper-jute-3.7.0.jar:snappy-java-1.1.7.7.jar:conf org.apache.zookeeper.server.PurgeTxnLog /datalog/ /data/ -n 3
log4j:WARN No appenders could be found for logger (org.apache.zookeeper.server.persistence.FileTxnSnapLog).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Removing file: Sep 9, 2021, 6:07:13 AM  /datalog/version-2/log.4d6800000001
Removing file: Sep 9, 2021, 5:06:57 AM  /data/version-2/snapshot.4d6700c1986c
Removing file: Sep 9, 2021, 6:07:13 AM  /data/version-2/snapshot.4d6800010b26
Removing file: Sep 9, 2021, 4:45:10 AM  /data/version-2/snapshot.4d6700bef73a
Removing file: Sep 9, 2021, 5:44:23 AM  /data/version-2/snapshot.4d6700c62032
Removing file: Sep 9, 2021, 5:31:04 AM  /data/version-2/snapshot.4d6700c48e0f
Removing file: Sep 9, 2021, 5:37:37 AM  /data/version-2/snapshot.4d6700c55610
Removing file: Sep 9, 2021, 5:14:36 AM  /data/version-2/snapshot.4d6700c29039
Removing file: Sep 9, 2021, 5:22:33 AM  /data/version-2/snapshot.4d6700c387b3
Removing file: Sep 9, 2021, 4:57:02 AM  /data/version-2/snapshot.4d6700c0571e
Removing file: Sep 9, 2021, 5:56:59 AM  /data/version-2/snapshot.4d6700c63856

A message for removing files should be printed, if not probably the directories’ paths are wrong!

This is how the zookeeper is organized in the system:

  1. Zookeeper installation directory is /apache-zookeeper-3.7.0-bin meaning the lib is under: /apache-zookeeper-3.7.0-bin/lib, where the jars are placed: 
    root@zoo1:/apache-zookeeper-3.7.0-bin/lib# ls /apache-zookeeper-3.7.0-bin/lib/
audience-annotations-0.12.0.jar               jline-2.14.6.LICENSE.txt                               netty-transport-native-unix-common-4.1.59.Final.LICENSE.txt
commons-cli-1.4.jar                           jline-2.14.6.jar                                       netty-transport-native-unix-common-4.1.59.Final.jar
jackson-annotations-2.10.5.jar                log4j-1.2.17.LICENSE.txt                               simpleclient-0.9.0.LICENSE.txt
jackson-core-2.10.5.jar                       log4j-1.2.17.jar                                       simpleclient-0.9.0.jar
jackson-databind-2.10.5.1.jar                 metrics-core-4.1.12.1.jar                              simpleclient_common-0.9.0.jar
javax.servlet-api-3.1.0.jar                   metrics-core-4.1.12.1.jar_LICENSE.txt                  simpleclient_common-0.9.0_LICENSE.txt
jetty-http-9.4.38.v20210224.LICENSE.txt       netty-buffer-4.1.59.Final.LICENSE.txt                  simpleclient_hotspot-0.9.0.jar
jetty-http-9.4.38.v20210224.jar               netty-buffer-4.1.59.Final.jar                          simpleclient_hotspot-0.9.0_LICENSE.txt
jetty-io-9.4.38.v20210224.LICENSE.txt         netty-codec-4.1.59.Final.LICENSE.txt                   simpleclient_servlet-0.9.0.jar
jetty-io-9.4.38.v20210224.jar                 netty-codec-4.1.59.Final.jar                           simpleclient_servlet-0.9.0_LICENSE.txt
jetty-security-9.4.38.v20210224.LICENSE.txt   netty-common-4.1.59.Final.LICENSE.txt                  slf4j-1.7.30.LICENSE.txt
jetty-security-9.4.38.v20210224.jar           netty-common-4.1.59.Final.jar                          slf4j-api-1.7.30.jar
jetty-server-9.4.38.v20210224.LICENSE.txt     netty-handler-4.1.59.Final.LICENSE.txt                 slf4j-log4j12-1.7.30.jar
jetty-server-9.4.38.v20210224.jar             netty-handler-4.1.59.Final.jar                         snappy-java-1.1.7.7.jar
jetty-servlet-9.4.38.v20210224.LICENSE.txt    netty-resolver-4.1.59.Final.LICENSE.txt                snappy-java-1.1.7.7.jar_LICENSE.txt
jetty-servlet-9.4.38.v20210224.jar            netty-resolver-4.1.59.Final.jar                        zookeeper-3.7.0.jar
jetty-util-9.4.38.v20210224.LICENSE.txt       netty-transport-4.1.59.Final.LICENSE.txt               zookeeper-jute-3.7.0.jar
jetty-util-9.4.38.v20210224.jar               netty-transport-4.1.59.Final.jar                       zookeeper-prometheus-metrics-3.7.0.jar
jetty-util-ajax-9.4.38.v20210224.LICENSE.txt  netty-transport-native-epoll-4.1.59.Final.LICENSE.txt
jetty-util-ajax-9.4.38.v20210224.jar          netty-transport-native-epoll-4.1.59.Final.jar
  2. The datalog directory is under /datalog: 
    root@zoo1:/apache-zookeeper-3.7.0-bin/lib# ls -altr /datalog/
total 12
drwxr-xr-x 1 root      root      4096 Sep  9 05:56 ..
drwxr-xr-x 3 zookeeper root      4096 Sep  9 05:56 .
drwxr-xr-x 2 zookeeper zookeeper 4096 Sep  9 07:04 version-2
root@zoo1:/apache-zookeeper-3.7.0-bin/lib# ls -altr /datalog/version-2/
total 131852
drwxr-xr-x 3 zookeeper root          4096 Sep  9 05:56 ..
-rw-r--r-- 1 zookeeper zookeeper 67108880 Sep  9 06:18 log.4d6800010b28
-rw-r--r-- 1 zookeeper zookeeper 67108880 Sep  9 06:29 log.4d6800025751
-rw-r--r-- 1 zookeeper zookeeper 67108880 Sep  9 06:39 log.4d680003b40f
-rw-r--r-- 1 zookeeper zookeeper 67108880 Sep  9 06:52 log.4d680004d2d8
drwxr-xr-x 3 zookeeper zookeeper     4096 Sep  9 06:52 .
-rw-r--r-- 1 zookeeper zookeeper 67108880 Sep  9 07:03 log.4d6800064eda
  3. The snapshot directory is under /data 
    root@zoo1:/apache-zookeeper-3.7.0-bin/lib# ls -altr /data/
total 968
-rw-r--r-- 1 zookeeper root           2 Aug 31 07:47 myid
drwxr-xr-x 3 zookeeper root        4096 Aug 31 07:55 .
drwxr-xr-x 1 root      root        4096 Sep  9 05:56 ..
drwxr-xr-x 3 zookeeper zookeeper 974848 Sep  9 07:04 version-2
root@zoo1:/apache-zookeeper-3.7.0-bin# ls -altr /data/version-2/
total 79004
drwxr-xr-x 3 zookeeper root         4096 Aug 31 07:55 ..
-rw-r--r-- 1 zookeeper zookeeper 6402486 Sep  9 04:45 snapshot.4d6700bef73a
-rw-r--r-- 1 zookeeper zookeeper 6068093 Sep  9 04:57 snapshot.4d6700c0571e
-rw-r--r-- 1 zookeeper zookeeper 6905356 Sep  9 05:06 snapshot.4d6700c1986c
-rw-r--r-- 1 zookeeper zookeeper 6484358 Sep  9 05:14 snapshot.4d6700c29039
-rw-r--r-- 1 zookeeper zookeeper 6319179 Sep  9 05:22 snapshot.4d6700c387b3
-rw-r--r-- 1 zookeeper zookeeper 6362239 Sep  9 05:31 snapshot.4d6700c48e0f
-rw-r--r-- 1 zookeeper zookeeper 6280967 Sep  9 05:37 snapshot.4d6700c55610
-rw-r--r-- 1 zookeeper zookeeper 6251946 Sep  9 05:44 snapshot.4d6700c62032
-rw-r--r-- 1 zookeeper zookeeper       5 Sep  9 05:56 acceptedEpoch
-rw-r--r-- 1 zookeeper zookeeper 6208681 Sep  9 05:56 snapshot.4d6700c63856
-rw-r--r-- 1 zookeeper zookeeper       5 Sep  9 05:56 currentEpoch
-rw-r--r-- 1 zookeeper zookeeper 7442360 Sep  9 06:07 snapshot.4d6800010b26
-rw-r--r-- 1 zookeeper zookeeper 7666290 Sep  9 06:18 snapshot.4d680002574f
-rw-r--r-- 1 zookeeper zookeeper 7467034 Sep  9 06:29 snapshot.4d680003b40d
drwxr-xr-x 2 root      root         4096 Sep  9 06:32 version-2
drwxr-xr-x 3 zookeeper zookeeper  974848 Sep  9 06:32 .

Do not use for directories /datalog/version-2 or /data/version-2 it is wrong and no files will be removed!

Troubleshooting

If executing the above line outputs a missing java class like below, the easiest way is just to search for the name in the [zookeeper-install-directory]/lib/ with tools like grep or any other text file search tool. 

root@zoo1:/apache-zookeeper-3.7.0-bin/lib# java -cp zookeeper-3.7.0.jar:slf4j-api-1.7.30.jar:slf4j-log4j12-1.7.30.jar:log4j-1.2.17.jar:zookeeper-jute-3.7.0.jar:conf org.apache.zookeeper.server.PurgeTxnLog /datalog/ /data/ -n 3
log4j:WARN No appenders could be found for logger (org.apache.zookeeper.server.persistence.FileTxnSnapLog).
log4j:WARN Please initialize the log4j system properly.
log4j:WARN See http://logging.apache.org/log4j/1.2/faq.html#noconfig for more info.
Exception in thread "main" java.lang.NoClassDefFoundError: org/xerial/snappy/SnappyInputStream
        at org.apache.zookeeper.server.persistence.FileSnap.findNValidSnapshots(FileSnap.java:171)
        at org.apache.zookeeper.server.persistence.FileTxnSnapLog.findNValidSnapshots(FileTxnSnapLog.java:568)
        at org.apache.zookeeper.server.PurgeTxnLog.purge(PurgeTxnLog.java:82)
        at org.apache.zookeeper.server.PurgeTxnLog.main(PurgeTxnLog.java:192)
Caused by: java.lang.ClassNotFoundException: org.xerial.snappy.SnappyInputStream
        at java.base/jdk.internal.loader.BuiltinClassLoader.loadClass(Unknown Source)
        at java.base/jdk.internal.loader.ClassLoaders$AppClassLoader.loadClass(Unknown Source)
        at java.base/java.lang.ClassLoader.loadClass(Unknown Source)
        ... 4 more
root@zoo1:/apache-zookeeper-3.7.0-bin/lib# grep -ir SnappyInputStream
grep: snappy-java-1.1.7.7.jar: binary file matches

So there is a match with the name SnappyInputStream in jar file snappy-java-1.1.7.7.jar, so just include it in the java -cp command.

Easy install the latest docker-compose with pip3 under Ubuntu

At present, the latest docker-compose version, which could be installed under Ubuntu 18, 20, and 21 is the 1.25 and 1.27 versions. There may be significant changes included in the latest versions and if one wants to install it there are two options:

For example, depends_on.service.condition: service_healthy is added with version 1.28. Using this new feature it is fairly easy to implement waiting for a docker container (service) before starting another docker.

Here is how easy it is to install and to have the latest stable docker-compose version, which is 1.29.2 at the writing of this article:

STEP 1) Update and upgrade.

Do this step always before installing new software.

sudo apt update
sudo apt upgrade -y

STEP 2) Install pip3 and docker.

pip 3 is the package installer for Python 3. When using docker-compose it is supposed to have the very Docker software, too.

apt install python3-pip docker
systemctl start docker

STEP 3) Install docker-compose using pip3.

pip3 install docker-compose

And here is what a version command prints:

root@srv:~# docker-compose version
docker-compose version 1.29.2, build unknown
docker-py version: 5.0.2
CPython version: 3.8.10
OpenSSL version: OpenSSL 1.1.1f  31 Mar 2020

Just to note, installing packages using other programs other than apt may lead to future conflicts!

The whole console output of the pip3 installing docker-compose

root@srv:~# apt update
Get:1 http://archive.ubuntu.com/ubuntu focal InRelease [265 kB]
Get:2 http://archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB]              
Get:3 http://archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB]
Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
Get:5 http://archive.ubuntu.com/ubuntu focal/multiverse amd64 Packages [177 kB]
Get:6 http://archive.ubuntu.com/ubuntu focal/restricted amd64 Packages [33.4 kB]
Get:7 http://archive.ubuntu.com/ubuntu focal/universe amd64 Packages [11.3 MB]
Get:8 http://archive.ubuntu.com/ubuntu focal/main amd64 Packages [1275 kB]                  
Get:9 http://archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [1514 kB]        
Get:10 http://archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [33.3 kB]
Get:11 http://archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [1069 kB]
Get:12 http://archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [575 kB]
Get:13 http://archive.ubuntu.com/ubuntu focal-backports/universe amd64 Packages [6324 B]
Get:14 http://archive.ubuntu.com/ubuntu focal-backports/main amd64 Packages [2668 B]
Get:15 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [1070 kB]
Get:16 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [790 kB]
Get:17 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [30.1 kB]
Get:18 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [525 kB]
Fetched 19.0 MB in 1s (16.7 MB/s)                          
Reading package lists... Done
Building dependency tree       
Reading state information... Done
All packages are up to date.
root@srv:~# apt upgrade -y
Reading package lists... Done
Building dependency tree       
Reading state information... Done
Calculating upgrade... Done
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
root@srv:~# apt install -y python3-pip docker
Reading package lists... Done
Building dependency tree       
Reading state information... Done
The following additional packages will be installed:
  binutils binutils-common binutils-x86-64-linux-gnu build-essential ca-certificates cpp cpp-9 dirmngr dpkg-dev fakeroot file g++ g++-9 gcc gcc-9 gcc-9-base gnupg gnupg-l10n gnupg-utils
  gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libasn1-8-heimdal libassuan0 libatomic1
  libbinutils libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdpkg-perl libexpat1 libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev
  libgdbm-compat4 libgdbm6 libglib2.0-0 libglib2.0-data libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libisl22
  libitm1 libkrb5-26-heimdal libksba8 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libperl5.30 libpython3-dev
  libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8 libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db
  libsqlite3-0 libssl1.1 libstdc++-9-dev libtsan0 libubsan1 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 linux-libc-dev make manpages manpages-dev mime-support
  netbase openssl patch perl perl-modules-5.30 pinentry-curses python-pip-whl python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pkg-resources
  python3-setuptools python3-wheel python3.8 python3.8-dev python3.8-minimal readline-common shared-mime-info tzdata wmdocker xdg-user-dirs xz-utils zlib1g-dev
Suggested packages:
  binutils-doc cpp-doc gcc-9-locales dbus-user-session libpam-systemd pinentry-gnome3 tor debian-keyring g++-multilib g++-9-multilib gcc-9-doc gcc-multilib autoconf automake libtool flex
  bison gdb gcc-doc gcc-9-multilib parcimonie xloadimage scdaemon glibc-doc git bzr gdbm-l10n libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap
  libsasl2-modules-otp libsasl2-modules-sql libstdc++-9-doc make-doc man-browser ed diffutils-doc perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libb-debug-perl
  liblocale-codes-perl pinentry-doc python3-doc python3-tk python3-venv python-setuptools-doc python3.8-venv python3.8-doc binfmt-support readline-doc
The following NEW packages will be installed:
  binutils binutils-common binutils-x86-64-linux-gnu build-essential ca-certificates cpp cpp-9 dirmngr docker dpkg-dev fakeroot file g++ g++-9 gcc gcc-9 gcc-9-base gnupg gnupg-l10n
  gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libalgorithm-diff-perl libalgorithm-diff-xs-perl libalgorithm-merge-perl libasan5 libasn1-8-heimdal libassuan0
  libatomic1 libbinutils libbsd0 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libdpkg-perl libexpat1 libexpat1-dev libfakeroot libfile-fcntllock-perl libgcc-9-dev
  libgdbm-compat4 libgdbm6 libglib2.0-0 libglib2.0-data libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libisl22
  libitm1 libkrb5-26-heimdal libksba8 libldap-2.4-2 libldap-common liblocale-gettext-perl liblsan0 libmagic-mgc libmagic1 libmpc3 libmpdec2 libmpfr6 libnpth0 libperl5.30 libpython3-dev
  libpython3-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libquadmath0 libreadline8 libroken18-heimdal libsasl2-2 libsasl2-modules libsasl2-modules-db
  libsqlite3-0 libssl1.1 libstdc++-9-dev libtsan0 libubsan1 libwind0-heimdal libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxml2 linux-libc-dev make manpages manpages-dev mime-support
  netbase openssl patch perl perl-modules-5.30 pinentry-curses python-pip-whl python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-pip python3-pkg-resources
  python3-setuptools python3-wheel python3.8 python3.8-dev python3.8-minimal readline-common shared-mime-info tzdata wmdocker xdg-user-dirs xz-utils zlib1g-dev
.....
.....
0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded.
Need to get 84.6 MB of archives.
After this operation, 370 MB of additional disk space will be used.
Processing triggers for ca-certificates (20210119~20.04.1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
root@srv:~# pip3 install docker-compose
Collecting docker-compose
  Downloading docker_compose-1.29.2-py2.py3-none-any.whl (114 kB)
     |████████████████████████████████| 114 kB 12.4 MB/s 
Collecting requests<3,>=2.20.0
  Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB)
     |████████████████████████████████| 62 kB 355 kB/s 
Collecting jsonschema<4,>=2.5.1
  Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB)
     |████████████████████████████████| 56 kB 3.4 MB/s 
Collecting websocket-client<1,>=0.32.0
  Downloading websocket_client-0.59.0-py2.py3-none-any.whl (67 kB)
     |████████████████████████████████| 67 kB 3.3 MB/s 
Collecting texttable<2,>=0.9.0
  Downloading texttable-1.6.4-py2.py3-none-any.whl (10 kB)
Collecting PyYAML<6,>=3.10
  Downloading PyYAML-5.4.1-cp38-cp38-manylinux1_x86_64.whl (662 kB)
     |████████████████████████████████| 662 kB 76.9 MB/s 
Collecting dockerpty<1,>=0.4.1
  Downloading dockerpty-0.4.1.tar.gz (13 kB)
Collecting docker[ssh]>=5
  Downloading docker-5.0.2-py2.py3-none-any.whl (145 kB)
     |████████████████████████████████| 145 kB 119.5 MB/s 
Collecting distro<2,>=1.5.0
  Downloading distro-1.6.0-py2.py3-none-any.whl (19 kB)
Collecting docopt<1,>=0.6.1
  Downloading docopt-0.6.2.tar.gz (25 kB)
Collecting python-dotenv<1,>=0.13.0
  Downloading python_dotenv-0.19.0-py2.py3-none-any.whl (17 kB)
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB)
     |████████████████████████████████| 138 kB 141.1 MB/s 
Collecting charset-normalizer~=2.0.0; python_version >= "3"
  Downloading charset_normalizer-2.0.4-py3-none-any.whl (36 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB)
     |████████████████████████████████| 145 kB 133.3 MB/s 
Collecting idna<4,>=2.5; python_version >= "3"
  Downloading idna-3.2-py3-none-any.whl (59 kB)
     |████████████████████████████████| 59 kB 1.6 MB/s 
Collecting pyrsistent>=0.14.0
  Downloading pyrsistent-0.18.0-cp38-cp38-manylinux1_x86_64.whl (118 kB)
     |████████████████████████████████| 118 kB 131.3 MB/s 
Requirement already satisfied: setuptools in /usr/lib/python3/dist-packages (from jsonschema<4,>=2.5.1->docker-compose) (45.2.0)
Collecting six>=1.11.0
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting attrs>=17.4.0
  Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB)
     |████████████████████████████████| 53 kB 899 kB/s 
Collecting paramiko>=2.4.2; extra == "ssh"
  Downloading paramiko-2.7.2-py2.py3-none-any.whl (206 kB)
     |████████████████████████████████| 206 kB 147.7 MB/s 
Collecting cryptography>=2.5
  Downloading cryptography-3.4.8-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.2 MB)
     |████████████████████████████████| 3.2 MB 147.4 MB/s 
Collecting bcrypt>=3.1.3
  Downloading bcrypt-3.2.0-cp36-abi3-manylinux2010_x86_64.whl (63 kB)
     |████████████████████████████████| 63 kB 1.4 MB/s 
Collecting pynacl>=1.0.1
  Downloading PyNaCl-1.4.0-cp35-abi3-manylinux1_x86_64.whl (961 kB)
     |████████████████████████████████| 961 kB 139.4 MB/s 
Collecting cffi>=1.12
  Downloading cffi-1.14.6-cp38-cp38-manylinux1_x86_64.whl (411 kB)
     |████████████████████████████████| 411 kB 84.0 MB/s 
Collecting pycparser
  Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB)
     |████████████████████████████████| 112 kB 140.9 MB/s 
Building wheels for collected packages: dockerpty, docopt
  Building wheel for dockerpty (setup.py) ... done
  Created wheel for dockerpty: filename=dockerpty-0.4.1-py3-none-any.whl size=16604 sha256=d6f2d3d74bad523b1a308a952176a1db84cb604611235c1a5ae1c936cefe7889
  Stored in directory: /root/.cache/pip/wheels/1a/58/0d/9916bf3c72e224e038beb88f669f68b61d2f274df498ff87c6
  Building wheel for docopt (setup.py) ... done
  Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13704 sha256=f8c389703e63ff7ec3734b240ba8d62c8f8bd99f3b05ccdcb0de1397aa523655
  Stored in directory: /root/.cache/pip/wheels/56/ea/58/ead137b087d9e326852a851351d1debf4ada529b6ac0ec4e8c
Successfully built dockerpty docopt
Installing collected packages: urllib3, charset-normalizer, certifi, idna, requests, pyrsistent, six, attrs, jsonschema, websocket-client, texttable, PyYAML, dockerpty, pycparser, cffi, cryptography, bcrypt, pynacl, paramiko, docker, distro, docopt, python-dotenv, docker-compose
Successfully installed PyYAML-5.4.1 attrs-21.2.0 bcrypt-3.2.0 certifi-2021.5.30 cffi-1.14.6 charset-normalizer-2.0.4 cryptography-3.4.8 distro-1.6.0 docker-5.0.2 docker-compose-1.29.2 dockerpty-0.4.1 docopt-0.6.2 idna-3.2 jsonschema-3.2.0 paramiko-2.7.2 pycparser-2.20 pynacl-1.4.0 pyrsistent-0.18.0 python-dotenv-0.19.0 requests-2.26.0 six-1.16.0 texttable-1.6.4 urllib3-1.26.6 websocket-client-0.59.0