Installing single node Elasticsearch 7.16 and Kibana 7.16 behind nginx web server under CentOS 8

This article will show how to install two big software – Elasticsearch to store information and Kibana to visualize the information under CentOS 8. Elasticsearch is ideal to store big data such as logs from user activities or server logs – one central repository for data, which is structured properly and it could be easily accessed and manipulated with various software.
Kibana is used mainly for visualizing the data stored in the Elasticseach server and manage the Elasticsearch service by the web. ste

Here is a simple example: send the web servers logs in Elasticsearch and visual statistical data with Kibana.

Using the rpm repository for the two software is the best option for installation and in future upgrades.

STEP 1) Install the CentOS 8.

How to install CentOS 8 could be found here – How to do a network installation of CentOS 8 (8.0.1950) – minimal server installation.
Or if a container approach is needed, there is a how to with LXC containerRun LXC CentOS 8 container with bridged network under CentOS 8.

STEP 2) Install the Elasticsearch.

This installation and configuration is for single node server setup.
First, create a rpm repository file /etc/yum.repos.d/elasticsearch.repo and fill it with the Elasticsearch repository information:

name=Elasticsearch repository for 7.x packages

Then import the Elasticsearch GPG key and install the Elasticsearch software:

[root@loganalyzer ~]# rpm --import
[root@loganalyzer ~]# dnf install elasticsearch
Last metadata expiration check: 0:00:19 ago on 11.12.2021 (Sat) 12:43:24 UTC.
Dependencies resolved.
 Package            Architecture             Version                     Repository                                Size
 elasticsearch      x86_64                   7.16.0-1                    elasticsearch                             327 M

Transaction Summary
Install  1 Package

Total download size: 327 M
Installed size: 526 M
Is this ok [y/N]: y
Downloading Packages:
elasticsearch-7.16.0-x86_64.rpm                                                                                 43 MB/s | 327 MB     00:07    
Total                                                                                                           43 MB/s | 327 MB     00:07     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                                                                                                                                     1/1 
  Running scriptlet: elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
Creating elasticsearch group... OK
Creating elasticsearch user... OK

  Installing       : elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
  Running scriptlet: elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 
### NOT starting on installation, please execute the following statements to configure elasticsearch service to start automatically using systemd
 sudo systemctl daemon-reload
 sudo systemctl enable elasticsearch.service
### You can start elasticsearch service by executing
 sudo systemctl start elasticsearch.service

Created elasticsearch keystore in /etc/elasticsearch/elasticsearch.keystore

[/usr/lib/tmpfiles.d/elasticsearch.conf:1] Line references path below legacy directory /var/run/, updating /var/run/elasticsearch → /run/elasticsearch; please update the tmpfiles.d/ drop-in file accordingly.

  Verifying        : elasticsearch-7.16.0-1.x86_64                                                                                                                                       1/1 



The configuration files are placed in /etc/elasticsearch/:
Keep on reading!

Kibana server is not ready yet – and Waiting for that migration to complete in the logs

Now, living in the cloud and big data there is a time when the admin may need to save all their logs in a central place! Elasticsearch and Kibana look good for the job! And after months of hassle-free work of the Elasticsearch and Kibana, Elasticsearch just stopped working and after a restart and upgrade (Elasticsearch and Kibana) Kibana showed an error message:

Kibana server is not ready yet

And if you have tried the STOP/START of Kibana and Elasticsearch and Kibana would still show the above message here is what you should do:

  1. Check if the two services are running! Kibana and Elasticsearch, if some of them is missing start it.
  2. Search for the logs and especially Elasticsearch logs. The first place to check is systemd logs with journalctl program (systemctl status also will point out the problem showing last lines of the logs).
  3. Look for the last lines and if they include

    Another Kibana instance appears to be migrating the index

    This article is probably the right place to solve the issue and start your setup successful.

STEP 1) Running services and analyzing the logs.

If kibana and elastisearch use systemd system to operate it is easy to access the logs with systemctl and journalctl
Check whether the kibana and elasticsearch are running with:

[root@loganalyzer ~]# ps ax|grep elasticsearch|grep -v grep
  258 ?        Ssl  836:31 /usr/share/elasticsearch/jdk/bin/java -Des.networkaddress.cache.ttl=60 -Des.networkaddress.cache.negative.ttl=10 -XX:+AlwaysPreTouch -Xss1m -Djava.awt.headless=true -Dfile.encoding=UTF-8 -Djna.nosys=true -XX:-OmitStackTraceInFastThrow -Dio.netty.noUnsafe=true -Dio.netty.noKeySetOptimization=true -Dio.netty.recycler.maxCapacityPerThread=0 -Dio.netty.allocator.numDirectArenas=0 -Dlog4j.shutdownHookEnabled=false -Dlog4j2.disable.jmx=true -Djava.locale.providers=COMPAT -Xms1g -Xmx1g -XX:+UseConcMarkSweepGC -XX:CMSInitiatingOccupancyFraction=75 -XX:+UseCMSInitiatingOccupancyOnly -XX:+HeapDumpOnOutOfMemoryError -XX:HeapDumpPath=/var/lib/elasticsearch -XX:ErrorFile=/var/log/elasticsearch/hs_err_pid%p.log -Xlog:gc*,gc+age=trace,safepoint:file=/var/log/elasticsearch/gc.log:utctime,pid,tags:filecount=32,filesize=64m -XX:MaxDirectMemorySize=536870912 -Des.path.home=/usr/share/elasticsearch -Des.path.conf=/etc/elasticsearch -Des.distribution.flavor=default -Des.distribution.type=rpm -Des.bundled_jdk=true -cp /usr/share/elasticsearch/lib/* org.elasticsearch.bootstrap.Elasticsearch -p /var/run/elasticsearch/ --quiet
  360 ?        Sl     0:00 /usr/share/elasticsearch/modules/x-pack-ml/platform/linux-x86_64/bin/controller
[root@loganalyzer ~]# ps ax|grep kibana|grep -v grep
 1284 ?        Ssl    4:32 /usr/share/kibana/bin/../node/bin/node /usr/share/kibana/bin/../src/cli -c /etc/kibana/kibana.yml

If one of the two services are missing you must start it! And second, each service should have only one instance (i.e. process)!
And check the kibana logs with journalctl

[root@loganalyzer ~]# journalctl -u kibana.service
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["info","plugins","bfetch"],"pid":1219,"message":"Setting up plugin"}
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["info","savedobjects-service"],"pid":1219,"message":"Waiting until all Elasticsearch nodes
 are compatible with Kibana before starting saved objects migrations..."}
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["info","savedobjects-service"],"pid":1219,"message":"Starting saved objects migrations"}
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["info","savedobjects-service"],"pid":1219,"message":"Creating index .kibana_task_manager_2
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["warning","savedobjects-service"],"pid":1219,"message":"Unable to connect to Elasticsearch
. Error: [resource_already_exists_exception] index [.kibana_task_manager_2/O070AunfSyG6hwd6_pqqRA] already exists, with { index_uuid=\"O070AunfSyG6hwd6_pqqRA\" & index=\".kibana_task_manager
_2\" }"}
Apr 24 23:09:31 loganalyzer kibana[1219]: {"type":"log","@timestamp":"2020-04-24T23:09:31Z","tags":["warning","savedobjects-service"],"pid":1219,"message":"Another Kibana instance appears to
 be migrating the index. Waiting for that migration to complete. If no other Kibana instance is attempting migrations, you can get past this message by deleting index .kibana_task_manager_2 
and restarting Kibana."}

The systemctl status may be used, too. The error and the index are shown in the last lines of the status output – look below.

The problem here is there was a migration of index .kibana_task_manager_2, but it was abandoned because of unknown reason and now we should delete it to be able to use our kibana service. The index name might be with another name but it is the same problem.

STEP 2) Delete kibana index

Delete the kibana index in elasticsearch backend using curl and HTTP/HTTPS request such as:

[root@loganalyzer kibana]# curl -XDELETE

Keep on reading!