Compilation failure in configure with syntax error near unexpected token -Wall,WFLAGS and AX_CHECK_COMPILE_FLAG

If you are trying to build program and in the configure stage you got something like this:

./configure: line 6849: syntax error near unexpected token `-Wall,WFLAGS="$WFLAGS -Wall"'
./configure: line 6849: `AX_CHECK_COMPILE_FLAG(-Wall,WFLAGS="$WFLAGS -Wall")'

You are missing


Check your system for the package including this software (a collection of freely re-usable Autoconf macros):

In our case we were experiencing a missing dependency for “app-admin/metalog” in Gentoo Linux system. Probably there is a bug, because autoconf-archive is not in the dependency graph of “app-admin/metalog” (app-admin/metalog-20181125), but it should be included.
Such kind of error could occur in all Linux systems. Here is what to install in

  • CentOS 7
    yum install autoconf-archive
  • Ubuntu 16/17/18+
  • apt install autoconf-archive
  • Gentoo Linux
  • emerge -va autoconf-archive

Missing pkg-config results in configure error: possibly undefined macro

This small article is for you who wonder why a configure script under Linux failed with an error like: error: possibly undefined macro: AC_MSG_ERROR
      If this token and others are legitimate, please use m4_pattern_allow.
      See the Autoconf documentation. error: possibly undefined macro: AC_CHECK_LIB error: possibly undefined macro: AC_CHECK_HEADER
autoreconf: /usr/bin/autoconf failed with exit status: 1

So autoreconf failed with missing macros, but you just saw you had the latest version and no clue what is wrong with the code you tried to compile!
In most cases the problem is trivial – you are missing the


It is a helper tool used when compiling. It helps to have the correct compiler options and not to hard-coded them in your files. So search for this tool in your Linux distro and install it.

Under CentOS 7

yum install pkgconfig

Under Ubuntu/Debian

apt-get install pkg-config

Under Gentoo

emerge -v dev-util/pkgconfig

Gentoo emerge a package with a custom option passed to the configure

Gentoo is a source-based Linux distro and each time we want to install a package in fact we compile it with the system program emerge. In most cases, we have USE flags for everything we need about a package, but we can further pass custom options directly to the configure script of the package through the emerge program. Using this method we can tune more subtle the configuration stage of a package and still using the package manager of the system, which is always the preferred way!
For example, we can install manually additional libraries in /usr/local/ or any other directory and we can use them passing the needed configuration to the configure script of the package. Let’s say we want to use a new feature of the latest OpenSSL library, but we do not want to install it globally and re-emerge everything linked to it, so we build it manually in a directory like /usr/local/openssl-1.1.1/ and we want to link our PHP against it, but the PHP is better to be installed by the emerge (the package manager) because it has many features like init script, the global default path to configurations and so on. So we can execute the following command:

EXTRA_ECONF="--with-openssl-dir=/usr/local/openssl-1.1.1/" emerge -avt php

you can use EXTRA_ECONF=”” to include options, which do not have USE flags. However there is a limitation, EXTRA_ECONF works only for autotools based ./configure scripts when the ebuild is using econf, so package not using autotools ./configure scripts won’t include the extra options.
It is good practice to make persistent this configuration over builds, so we can use


to save the configuration for future building of the package:

echo "EXTRA_ECONF=\"--with-openssl-dir=/usr/local/openssl-1.1.1/\"" > /etc/portage/env/php.conf
echo "dev-lang/php php.conf" > /etc/portage/package.env